miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71723392|gb|DR954029.1|DR954029 TGCTGCTGCTGTGAAACCTGAAACGAAATCTGAAGATCCTGCTCCAGAAAGCAAAACCGAAGGAGAGAAATCAGTGCCAG
TGGTGAAGAAGGATGGTGAGACTCCATCCTCTTCATCAAAACCTCCTGGAGTCCCTCCTGACAATGAGTTTGAGAAACGG
ATCAGACCAGAGGTCATTCCTGCAAATGAGATTGGAGTGAGCTTTGCAGACGTTGGTGCACTAGATGAAATAAAAGAGTC
ACTTCAGGAATTAGTCATGCTTCCTCTTCGAAGACCAGACCTCTTTAAAGGCGGACTTCTGAAGCCTTGCAAAGGAATAC
TGCTGTTTGGGCCTCCTGGTACTGGAAAGACAATGCTGGCCAAGGCCATTGCTAATGAGGCAGGAGCTAGCTTTATCAAT
GTTTCCATGTCTACCATCACTTCGAAATGGTTTGGGGAAGATGAGAAGAATGTTAGAGCTTTGTTTTCCCTTGCGGCAAA
GGTCTCACCTACAATTATATTTGTGGATGAGGTCGACAGTATGCTTGGGCAGCGAACCCGAGTTGGGGAGCACGAAGCCA
TGAGGAAGATAAAGAATGAGTTCATGACCCACTGGGATGGGCTGTTGACAAAGCCTGGTGAGCAGATCCTTGTTCTTGCT
GCGACGAACAGGCCCTTTGACCTTGATGAAGCAATTATCAGGCGGTTTGAACGCAGGATAATGGTTGGTCTACCAGCGGT
AGAGAACAGAG




Most similar to sp|Q6NW58|SPAST_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6NW58|SPAST_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=2
          Length = 570

 Score =  197 bits (502), Expect = 5e-50
 Identities = 100/197 (50%), Positives = 144/197 (73%)
 Frame = +2

Query: 140 DNEFEKRIRPEVIPANEIGVSFADVGALDEIKESLQELVMLPLRRPDLFKGGLLKPCKGI 319
           D++    I  E++ +  + V F D+   D  K++LQE+V+LP  RP+LF G L  P +G+
Sbjct: 274 DSKLASLILNEIVDSGSV-VRFDDIAGQDLAKQALQEIVILPALRPELFTG-LRAPARGL 331

Query: 320 LLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTII 499
           LLFGPPG GKTMLAKA+A E+ A+F N+S +T+TSK+ GE EK VRALF++A ++ P+II
Sbjct: 332 LLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSII 391

Query: 500 FVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAII 679
           F+DE+DS+L +R R GEH+A R++K EF+  +DG+ +   E++LV+ ATNRP +LDEA++
Sbjct: 392 FIDEIDSLLCER-REGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVL 450

Query: 680 RRFERRIMVGLPAVENR 730
           RRF +RI V LP  E R
Sbjct: 451 RRFAKRIYVALPTEETR 467